PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042185.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 150aa    MW: 16896.3 Da    PI: 11.2803
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042185.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.47.6e-308113199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+ t+sdv+k++rlv+pk++ae+h       +  +++++ l + d  g++W++++ y+++s +yvlt+GW++Fvk++ L++gD++ F+ +   e+
  EcC042185.20   8 FQKEVTRSDVGKLNRLVIPKQHAEKHfplhnrsSPTTPKGTLLNFIDGGGKVWRFRYLYWNSSHSYVLTRGWSRFVKEKSLRAGDIISFHQSAGPEK 104
                   99***************************998755566899*************************************************7655666 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   ++++  +r+
  EcC042185.20 105 QFHINYIRR 113
                   678777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-364108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-305113IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-267112No hitNo description
SMARTSM010192.1E-248114IPR003340B3 DNA binding domain
PfamPF023623.9E-268112IPR003340B3 DNA binding domain
PROSITE profilePS5086314.0438114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
AAACHLLFQK EVTRSDVGKL NRLVIPKQHA EKHFPLHNRS SPTTPKGTLL NFIDGGGKVW  60
RFRYLYWNSS HSYVLTRGWS RFVKEKSLRA GDIISFHQSA GPEKQFHINY IRRSGLSQAR  120
PVHPVQKVRL FGVDIFQVSG TGGGVNCGGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-48411510119DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010040940.19e-90PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotP822803e-55RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A059CBR51e-95A0A059CBR5_EUCGR; Uncharacterized protein
STRINGPOPTR_0008s11600.11e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-56related to ABI3/VP1 2